TY - JOUR A1 - Özsoylu, Dua A1 - Aliazizi, Fereshteh A1 - Wagner, Patrick A1 - Schöning, Michael Josef T1 - Template bacteria-free fabrication of surface imprinted polymer-based biosensor for E. coli detection using photolithographic mimics: Hacking bacterial adhesion JF - Biosensors and Bioelectronics N2 - As one class of molecular imprinted polymers (MIPs), surface imprinted polymer (SIP)-based biosensors show great potential in direct whole-bacteria detection. Micro-contact imprinting, that involves stamping the template bacteria immobilized on a substrate into a pre-polymerized polymer matrix, is the most straightforward and prominent method to obtain SIP-based biosensors. However, the major drawbacks of the method arise from the requirement for fresh template bacteria and often non-reproducible bacteria distribution on the stamp substrate. Herein, we developed a positive master stamp containing photolithographic mimics of the template bacteria (E. coli) enabling reproducible fabrication of biomimetic SIP-based biosensors without the need for the “real” bacteria cells. By using atomic force and scanning electron microscopy imaging techniques, respectively, the E. coli-capturing ability of the SIP samples was tested, and compared with non-imprinted polymer (NIP)-based samples and control SIP samples, in which the cavity geometry does not match with E. coli cells. It was revealed that the presence of the biomimetic E. coli imprints with a specifically designed geometry increases the sensor E. coli-capturing ability by an “imprinting factor” of about 3. These findings show the importance of geometry-guided physical recognition in bacterial detection using SIP-based biosensors. In addition, this imprinting strategy was employed to interdigitated electrodes and QCM (quartz crystal microbalance) chips. E. coli detection performance of the sensors was demonstrated with electrochemical impedance spectroscopy (EIS) and QCM measurements with dissipation monitoring technique (QCM-D). KW - Surface imprinted polymer KW - E. coli detection KW - Photolithographic mimics KW - Master stamp KW - Quartz crystal microbalance Y1 - 2024 U6 - https://doi.org/10.1016/j.bios.2024.116491 SN - 1873-4235 (eISSN) SN - 0956-5663 N1 - Corresponding author: Michael J. Schöning VL - 261 PB - Elsevier CY - Amsterdam ER - TY - CHAP A1 - Niendorf, Thoralf A1 - Winter, Lukas A1 - Frauenrath, Tobias ED - Millis, Richard T1 - Electrocardiogram in an MRI environment: Clinical needs, practical considerations, safety implications, technical solutions and fFuture directions T2 - Advances in Electrocardiograms - Methods and Analysis Y1 - 2012 SN - 978-953-307-923-3 (print) SN - 978-953-51-6762-4 (eBook) U6 - https://doi.org/10.5772/24340 SP - 309 EP - 324 PB - IntechOpen CY - London ER - TY - CHAP A1 - Engel, Mareike A1 - Thieringer, Julia A1 - Tippkötter, Nils T1 - Linking bioprocess engineering and electrochemistry for sustainable biofuel production T2 - Young Researchers Symposium, YRS 2016. Proceedings N2 - Electromicrobial engineering is an emerging, highly interdisciplinary research area linking bioprocesses with electrochemistry. In this work, microbial electrosynthesis (MES) of biobutanol is carried out during acetone-butanol-ethanol (ABE) fermentations with Clostridium acetobutylicum. A constant electric potential of −600mV (vs. Ag/AgCl) with simultaneous addition of the soluble redox mediator neutral red is used in order to study the electron transfer between the working electrode and the bacterial cells. The results show an earlier initiation of solvent production for all fermentations with applied potential compared to the conventional ABE fermentation. The f inal butanol concentration can be more than doubled by the application of a negative potential combined with addition of neutral red. Moreover a higher biofilm formation on the working electrode compared to control cultivations has been observed. In contrast to previous studies, our results also indicate that direct electron transfer (DET) might be possible with C. acetobutylicum. The presented results make microbial butanol production economically attractive and therefore support the development of sustainable production processes in the chemical industry aspired by the “Centre for resource-efficient chemistry and raw material change” as well as the the project “NanoKat” working on nanostructured catalysts in Kaiserslautern. Y1 - 2016 N1 - Young Researchers Symposium, YRS 2016, 14th - 15th April 2016, Fraunhofer-Zentrum Kaiserslautern SP - 49 EP - 53 PB - Fraunhofer Verlag CY - Karlsruhe ER - TY - GEN A1 - Duwe, A. A1 - Schlegel, C. A1 - Tippkötter, Nils A1 - Ulber, Roland T1 - Sequentielle Extraktion von Cellulose zur effizienten Nutzung der Stoffströme in der Holzbioraffinerie T2 - Chemie Ingenieur Technik N2 - In der Reihe der nachwachsenden Rohstoffe besitzt Holz als erneuerbare und umweltfreundliche Ressource ein großes Potenzial. Über 11 Mio. ha Holz, das laut der Fachagentur für nachwachsende Rohstoffe (FNR) auch für industrielle Zwecke genutzt werden kann, wuchsen im Jahr 2013 allein auf bundesdeutscher Fläche. 56,8 Mio. m³ jährlicher Holzeinschlag in den letzten zehn Jahren wurde zu knapp der Hälfte stofflich und der Rest energetisch verwertet. Im Rahmen dieser Arbeit konnte auf der Basis vom Holz der Buche, die nach Fichte und Kiefer die dritthäufigste Baumart in Deutschland ist und 15% der deutschen Waldfläche ausmacht, die Fraktionierung der polymeren Hauptbestandteile mit niedrigem energetischen Einsatz erreicht werden. Hierbei werden in einem nachgeschalteten Extraktionsprozess die beiden Komponenten Hemicellulose und Lignin in flüssiger Form von der finalen festen Cellulosefraktion abgetrennt. Die Extraktion der Hemicellulose erfolgt durch eine Liquid Hot Water (LHW)-Behandlung. Untersucht wird der katalytische Zusatz anorganischer Säuren wie H₃PO₄ und H₂SO₄. Im Hinblick auf die weitere Verwertung von Lignin zu aromatischen Synthesebausteinen kommt die Organosolv-Extraktion mit einem Ethanol/Wasser-Gemisch zum Einsatz. Von Vorteil ist die weitere Verwendung beider Stoffströme ohne Fällungsschritt und nachteiliger Verdünnung der Hemicellulose. Y1 - 2014 U6 - https://doi.org/10.1002/cite.201450308 SN - 0009-286X SN - 1522-2640 (eISSN) N1 - ProcessNet-Jahrestagung 2014 und 31. DECHEMA-Jahrestagung der Biotechnologen, 30. September - 2. Oktober 2014, Eurogress Aachen VL - 86 IS - 9 SP - 1400 PB - Wiley-VCH CY - Weinheim ER - TY - GEN A1 - Möhring, S. A1 - Wulfhorst, H. A1 - Capitain, C. A1 - Roth, J. A1 - Tippkötter, Nils T1 - Fractioning of lignocellulosic biomass: Scale-down and automation of thermal pretreatment for parameter optimization T2 - Chemie Ingenieur Technik N2 - In order to efficiently convert lignocellulose, it is often necessary to conduct a pretreatment. The biomass considered in this study typically comprises of agricultural and horticultural residues, as well as beechwood. A very environmentally friendly method, namely, fungal pretreatment using white-rot fungi, leads to an enhanced enzymatic hydrolysis. In contrast to other processes presented, the energy input is extremely low. However, the fungal growth on the lignocellulosic substrates takes several weeks at least in order to be effective. Thus, the reduction of chemicals and energy for thermal processing is a target of our current research. Liquid hot water (LHW) and solvent-based pretreatment (OrganoSolv) require more complex equipment, as they depend on high temperatures (160 – 180 °C) and enhanced pressure (up to 20 bar). However, they prove to be promising processes in regard to the fractioning of lignocellulose. For optimal lignin recovery the parameters differ from those established in cellulose extraction. A novel screening system scaled down to a reaction volume of 100 mL has been developed and successfully tested for this purpose. Y1 - 2016 U6 - https://doi.org/10.1002/cite.201650288 SN - 0009-286X SN - 1522-2640 (eISSN) N1 - ProcessNet-Jahrestagung und 32. DECHEMA-Jahrestagung der Biotechnologen 2016, 12. - 15. September 2016, Eurogress Aachen VL - 88 IS - 9 SP - 1229 PB - Wiley-VCH CY - Weinheim ER - TY - GEN A1 - Ross-Jones, J. A1 - Teumer, T. A1 - Capitain, C. A1 - Tippkötter, Nils A1 - Krause, M. J. A1 - Methner, F.-J. A1 - Rädle, M. T1 - Analytical methods for in-line characterization of beer haze T2 - Trends in Brewing N2 - In most beers, producers strive to minimize haze to maximize visual appeal. To detect the formation of particulates, a measurement system for sub-micron particles is required. Beer haze is naturally occurring, composed of protein or polyphenol particles; in their early stage of growth their size is smaller than 2 µm. Microscopy analysis is time and resource intensive; alternatively, backscattering is an inexpensive option for detecting particle sizes of interest. Y1 - 2018 N1 - Trends in Brewing, April 8 –12, 2018, Ghent, Belgium ER - TY - GEN A1 - Frauenrath, Tobias A1 - Pfeiffer, Harald A1 - Hezel, Fabian A1 - Dieringer, Matthias A. A1 - Winter, Lukas A1 - Gräßl, Andreas A1 - Santoro, Davide A1 - Özerdem, Celal A1 - Renz, Wolfgang A1 - Greiser, Andreas A1 - Niendorf, Thoralf T1 - Lessons learned from cardiac MRI at 7.0 T: LV function assessment at 3.0 T using local multi-channel transceiver coil arrays T2 - 2012 ISMRM Annual Meeting Proceedings N2 - Cardiac MR (CMR) is of proven clinical value but also an area of vigorous ongoing research since image quality is not always exclusively defined by signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR). Recent developments of CMR at 7.0 T have been driven by pioneering explorations into novel multichannel transmit and receive coil array technology to tackle the challenges B1+-field inhomogeneities, to offset specific-absorption rate (SAR) constraints and to reduce banding artifacts in SSFP imaging. For this study, recognition of the benefits and performance of local surface Tx/Rx-array structures recently established at 7.0 T inspired migration to 3.0 T, where RF inhomogeneities and SAR limitations encountered in routine clinical CMR, though somewhat reduced versus the 7.0 T situation, remain significant. For all these reasons, this study was designed to build and examine the feasibility of a local four channel Tx/Rx cardiac coil array for anatomical and functional cardiac imaging at 3.0 T. For comparison, a homebuilt 4 channel Rx cardiac coil array exhibiting the same geometry as the Tx/Rx coil and a Rx surface coil array were used. Y1 - 2012 SN - 1545-4428 N1 - ISMRM 20th Annual Meeting & Exhibition, 5-11 May 2012, Melbourne, Australia ER - TY - GEN A1 - Frauenrath, Tobias A1 - Fuchs, Katharina A1 - Hezel, Fabian A1 - Dieringer, Matthias A. A1 - Rieger, Jan A1 - Niendorf, Thoralf T1 - Improved cardiac triggering by combining multiple physiological signals: a cardiac MR feasibility study at 7.0 T T2 - 2012 ISMRM Annual Meeting Proceedings N2 - In current clinical cardiovascular MR (CMR) practice cardiac motion is commonly dealt with using ECG based synchronization. However, ECG is corrupted by magneto-hydrodynamic (MHD) effects in magnetic fields. This leads to artifacts in the ECG trace and evokes severe T-wave elevations, which might be misinterpreted as R-waves resulting in erroneous triggering. At (ultra)high field strengths, the propensity of ECG recordings to MHD effects is further pronounced. Pulse oximetry (POX) being inherently sensitive to blood oxygenation provides an alternative approach for cardiac gating. However, due to the travel time of the blood the peak of maximum oxygenation and hence the trigger is delayed by approx. 300 ms with respect to the ECG's R-wave. Also the peak of maximum oxygenation shows a jitter of up to 65 ms. Alternative triggering approaches include acoustic cardiac triggering (ACT). In current clinical practice cardiac gating / triggering commonly relies on using single physiological signals only. Realizing this limitation this study proposes a combined triggering approach which exploits multiple physiological signals including ECG, POX or ACT to track cardiac activity. The feasibility of the coupled approach is examined for LV function assessment at 7.0 T. For this purpose, breath-held 2D-CINE imaging in conjunction with cardiac synchronization was performed paralleled by real time logging of physiological waveforms to track (mis)synchronization between the cardiac cycle and data acquisition. Combinations of the ECG, POX and ACT signals were evaluated and processed in real time to facilitate reliable trigger information. Y1 - 2012 SN - 1545-4428 N1 - ISMRM 20th Annual Meeting & Exhibition, 5-11 May 2012, Melbourne, Australia ER - TY - GEN A1 - Tkachenko, Valeriy A1 - von Knobelsdorff-Brenkenhoff, Florian A1 - Kleindienst, Denise A1 - Winter, Lukas A1 - Rieger, Jan A1 - Frauenrath, Tobias A1 - Dieringer, Matthias A. A1 - Santoro, Davide A1 - Niendorf, Thoralf A1 - Schulz-Menger, Jeanette T1 - Cardiovasular MR at 7Tesla: assessment of the right ventricle T2 - 2012 ISMRM Annual Meeting Proceedings N2 - The assessment of the right ventricle (RV) is a challenge in today's cardiology, but of growing clinical impact regarding patient prognosis in different cardiac diseases. The detection and differentiation of small wall motion abnormalities may help to enhance the differentiation of cardiomyopathies including Arrhythmogenic Rightventricular Cardiomyopathy. Cardiovascular magnetic resonance (CMR) at 1.5T is the accepted gold standard for RV quantification. The higher spatial resolution achievable at ultrahigh field strength (UHF) offers the potential to gain new insights into the structure and function of the RV. To approach this goal accurate RV chamber quantification at 7T has to be proven. Consequently this study examines the feasibility of assessment of RV dimensions and function at 7T using improved spatial resolution enabled by the intrinsic sensitivity gain of UHF CMR. For this purpose, a dedicated 16 channel TX/RX RF coil array is used together with 2D CINE fast gradient echo (FGRE) imaging. For comparison RV chamber quantification is conducted at 1.5T using a SSFP based state of the art clinical protocol. Y1 - 2012 SN - 1545-4428 N1 - ISMRM 20th Annual Meeting & Exhibition, 5-11 May 2012, Melbourne, Australia ER - TY - GEN A1 - Gräßl, Andreas A1 - Renz, Wolfgang A1 - Hezel, Fabian A1 - Frauenrath, Tobias A1 - Pfeiffer, Harald A1 - Hoffmann, Werner A1 - Kellmann, Peter A1 - Martin, Conrad A1 - Niendorf, Thoralf T1 - Design, evaluation and application of a modular 32 channel transmit/receive surface coil array for cardiac MRI at 7T T2 - 2012 ISMRM Annual Meeting Proceedings N2 - Cardiac MR (CMR) at ultrahigh (≥7.0 T) fields is regarded as one of the most challenging MRI applications. At 7.0 T image quality is not always exclusively defined by signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR). Detrimental effects bear the potential to spoil the signal-to-noise (SNR) and contrast-to-noise (CNR) benefits of cardiac MR (CMR) at 7.0 T. B₁⁺-inhomogeneities and signal voids represent the main challenges. Various pioneering coil concepts have been proposed to tackle these issues, enabling cardiac MRI at 7.0 T. This includes a trend towards an ever larger number of transmit and receive channels. This approach affords multi-dimensional B₁⁺ modulations to improve B₁⁺ shimming performance and to enhance RF efficiency. Also, parallel imaging benefits from a high number of receive channels enabling two-dimensional acceleration. Realizing the limitations of existing coil designs tailored for UHF CMR and recognizing the opportunities of a many element TX/RX channel architecture this work proposes a modular, two dimensional 32-channel transmit and receive array using loop elements and examines its efficacy for enhanced B¹+ homogeneity and improved parallel imaging performance. Y1 - 2012 SN - 1545-4428 N1 - ISMRM 20th Annual Meeting & Exhibition, 5-11 May 2012, Melbourne, Australia ER -