TY - JOUR A1 - Bäcker, Matthias A1 - Poghossian, Arshak A1 - Schöning, Michael Josef A1 - Schnitzler, Thomas A1 - Biselli, Manfred A1 - Zang, Werner A1 - Wagner, Patrick T1 - Entwicklung eines modularen festkörperbasierten Sensorsystems für die Überwachung von Zellkulturfermentationen JF - Tagungsband: Sensoren und Messsysteme 2010 N2 - In diesem Beitrag werden Ergebnisse der Entwicklung eines modularen festkörperbasierten Sensorsystems für die Überwachung von Zellkulturfermentationen präsentiert. Zur Messung der Elektrolytleitfähigkeit wurde das Layout von Interdigitalelektroden angepasst, um in vergleichsweise gut leitenden Elektrolyten zu messen. Durch Quervernetzung von Glucose-Oxidase mit Glutaraldehyd und Immobilisierung auf einer Platinelektrode wurde ein amperometrischer Glucosesensor mit einem linearen Messbereich von bis zu 2 mM und einer Sensitivität von 168 nA/mM realisiert. Y1 - 2010 SN - 978-3-8007-3260-9 N1 - Sensoren und Messsysteme 2010 - 15. ITG/GMA-Fachtagung, 18.05.2010 - 19.05.2010 in Nürnberg SP - 688 EP - 698 PB - VDE Verlag CY - Berlin ER - TY - JOUR A1 - Staat, Manfred A1 - Baroud, Gamal A1 - Topcu, M. A1 - Sponagel, Stefan T1 - Soft Materials in Technology and Biology – Characteristics, Properties, and Parameter Identification JF - Bioengineering in Cell and Tissue Research / Artmann, Gerhard M. ; Chien, Shu (Eds.) Y1 - 2008 SN - 978-3-540-75408-4 SP - 253 EP - 315 PB - Springer CY - Berlin ER - TY - JOUR A1 - Temiz Artmann, Aysegül A1 - Başkurt, Oǧuz Kerim A1 - Pekcetin, C. A1 - Kandemir, F. T1 - Leukocyte activation, oxidant stress and red blood cell properties after acute, exhausting exercise in rats. Temiz, A.; Baskurt, O. K., Pekcetin, C.; Kandemir, F.; Güre, A. JF - Clinical Hemorheology and Microcirculation. 22 (2000), H. 4 Y1 - 2000 SN - 1386-0291 SP - 253 EP - 259 ER - TY - JOUR A1 - Temiz Artmann, Aysegül A1 - Yalcin, Ozlem A1 - Resmi, Halil A1 - Başkurt, Oǧuz Kerim T1 - Can white blood cell activation be one of the major factors that affect hemorheological parameters during and after exercise? JF - Clinical Hemorheology and Microcirculation. 26 (2002), H. 3 Y1 - 2002 SN - 1386-0291 N1 - = The 11th European Symposium on Clinical Hemorheology, Rouen, France, 19-22 September 2000 SP - 189 EP - 193 ER - TY - JOUR A1 - Gerhards, Michael A1 - Belloum, Adam A1 - Berretz, Frank A1 - Sander, Volker A1 - Skorupa, Sascha T1 - A history-tracing XML-based provenance framework for workflows JF - The 5th Workshop on Workflows in Support of Large-Scale Science N2 - The importance of validating and reproducing the outcome of computational processes is fundamental to many application domains. Assuring the provenance of workflows will likely become even more important with respect to the incorporation of human tasks to standard workflows by emerging standards such as WS-HumanTask. This paper addresses this trend by an actor-based workflow approach that actively support provenance. It proposes a framework to track and store provenance information automatically that applies for various workflow management systems. In particular, the introduced provenance framework supports the documentation of workflows in a legally binding way. The authors therefore use the concept of layered XML documents, i.e. history-tracing XML. Furthermore, the proposed provenance framework enables the executors (actors) of a particular workflow task to attest their operations and the associated results by integrating digital XML signatures. KW - workflow KW - provenance KW - framework KW - containers KW - humans KW - synchronization KW - libraries KW - history KW - concrete KW - XML Y1 - 2010 SN - 978-1-4244-8989-3 U6 - https://doi.org/10.1109/WORKS.2010.5671873 N1 - The 5th Workshop on Workflows in Support of Large-Scale Science, 14 Nov. 2010, New Orleans, USA PB - IEEE CY - New York ER - TY - JOUR A1 - Sponagel, Stefan A1 - Baroud, Gamal A1 - Falk, R. A1 - Crookshank, M. T1 - Corrigendum to “Experimental and theoretical investigation of directional permeability of human vertebral cancellous bone for cement infiltration”. Baroud, G.; Falk, R.; Crookshank, M.; Sponagel, S.; Steffen, T. JF - Journal of Biomechanics. 37 (2004), H. 2 Y1 - 2004 SN - 0021-9290 SP - 1802 ER - TY - JOUR A1 - Temiz Artmann, Aysegül A1 - Başkurt, Oǧuz Kerim A1 - Edremitlioglu, M. T1 - In vitro effects of in vivo activated leukocytes on red blood cell filterability and lipid peroxidation. Baskurt, O.K.; Edremitlioglu, M.; Temiz, A. JF - Clinical Hemorheology. 14 (1994), H. 4 Y1 - 1994 SP - 591 EP - 596 ER - TY - JOUR A1 - Sponagel, Stefan A1 - Baroud, Gamal A1 - Steffen, T. A1 - Wu, J. T1 - Parameter identification for cement infiltration of osteoporotic bone JF - Poromechanics II : Proceedings of the Second Biot Conference on Poromechanics Grenoble, France 26 - 28 August 2002 / ed. by J.-L. Auriault ... Y1 - 2002 SN - 90-5809-394-8 SP - 55 EP - 58 PB - Balkema CY - Lisse [u.a.] ER - TY - JOUR A1 - Temiz Artmann, Aysegül A1 - Başkurt, Oǧuz Kerim A1 - Meiselman, H. J. T1 - Effect of superoxide anions on red blood cell rheologic properties. Baskurt, O. K.; Temiz, A.; Meiselman, H. J. JF - Free Radical Biology and Medicine. 24 (1998), H. 1 Y1 - 1998 SN - 0891-5849 SP - 102 EP - 110 ER - TY - JOUR A1 - Temiz Artmann, Aysegül A1 - Başkurt, Oǧuz Kerim A1 - Meiselman, H. J. T1 - Red blood cell aggregation in experimental sepsis . Baskurt, O. K.; Temiz, A.; Meiselman, H. J. JF - Journal of Laboratory and Clinical Medicine. 130 (1997), H. 2 Y1 - 1997 SN - 0022-2143 SP - 183 EP - 190 ER - TY - JOUR A1 - Temiz Artmann, Aysegül A1 - Başkurt, Oǧuz Kerim A1 - Edremitlioglu, M. T1 - Effect of erythrocyte deformability on myocardial hematocrit gradient. Baskurt, O.K.; Edremitlioglu, M.; Temiz, A. JF - American Journal of Physiology: Heart and Circulatory Physiology. 268 (1995), H. 1 Y1 - 1995 SN - 0363-6135 SP - 260 EP - 264 ER - TY - JOUR A1 - Wagner, Torsten A1 - Miyamoto, Ko-ichiro A1 - Schöning, Michael Josef A1 - Yoshinobu, Tatsuo T1 - Novel combination of digital light processing (DLP) and light-addressable potentiometric sensors (LAPS) for flexible chemical imaging JF - Procedia Engineering N2 - Chemical imaging systems allow the visualisation of the distribution of chemical species on the sensor surface. This work represents a new flexible approach of read out in a light-addressable potentiometric sensor (LAPS) with the help of a digital light processing (DLP) set-up. The DLP, known well for video projectors, consists of a mirror-array MEMS device which allows fast and flexible generation of light patterns. With the help of these light patterns the sensor surface of the LAPS device can be read out sequentially in a raster like scheme (scanning LAPS). The DLP approach has several advantages compared to conventional scanning LAPS set-ups, e.g., the spot size, the shape and the intensity of the light pointer can be changed easily and no mechanical movement is necessary, which reduces the size of the set-up and increases the stability and speed of measurement. Y1 - 2010 U6 - https://doi.org/10.1016/j.proeng.2010.09.161 SN - 1877-7058 N1 - Eurosensor XXIV Conference, 5-8 September 2010, Linz, Austria VL - 5 SP - 520 EP - 523 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Abouzar, Maryam H. A1 - Pedraza, A. M. A1 - Schöning, Michael Josef A1 - Poghossian, Arshak T1 - Label-free DNA hybridization and denaturation detection by means of field-effect nanoplate SOI capacitors functionalized with gold nanoparticles JF - Procedia Engineering N2 - A new approach for a label-free electrical detection of DNA hybridization and denaturation using an array of individually addressable field-effect nanoplate SOI (silicon-on-insulator) capacitors functionalized with gold nanoparticles is presented. By using a constant-capacitance measuring setup in a differential mode, signal changes of ∼110 mV and ∼70 mV have been registered after the DNA hybridization and denaturation events, respectively. Y1 - 2010 U6 - https://doi.org/10.1016/j.proeng.2010.09.259 SN - 1877-7058 N1 - Eurosensor XXIV Conference, 5-8 September 2010, Linz, Austria VL - 5 SP - 918 EP - 921 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Berretz, Frank A1 - Skorupa, Sascha A1 - Sander, Volker A1 - Belloum, Adam T1 - Towards an actor-driven workflow management system for grids JF - Proceedings of 2010 International Symposium on Collaborative Technologies and Systems N2 - Currently, most workflow management systems in Grid environments provide push-oriented job distribution strategies, where jobs are explicitly delegated to resources. In those scenarios the dedicated resources execute submitted jobs according to the request of a workflow engine or Grid wide scheduler. This approach has various limitations, particularly if human interactions should be integrated in workflow execution. To support human interactions with the benefit of enabling inter organizational computation and community approaches, this poster paper proposes the idea of a pull-based task distribution strategy. Here, heterogeneous resources, including human interaction, should actively select tasks for execution from a central repository. This leads to special demands regarding security issues like access control. In the established push-based job execution the resources are responsible for granting access to workflows and job initiators. In general this is done by access control lists, where users are explicitly mapped to local accounts according to their policies. In the pull-based approach the resources actively apply for job executions by sending requests to a central task repository. This means that every resource has to be able to authenticate against the repository to be authorized for task execution. In other words the authorization is relocated from the resources to the repository. The poster paper introduces current work regarding to the mentioned security aspects in the pull-based approach within the scope of the project “HiX4AGWS”. KW - scheduling KW - engines KW - resource management KW - grid computing KW - access control KW - distribution strategy KW - authorization KW - security KW - humans KW - workflow management software Y1 - 2010 SN - 978-1-4244-6619-1 U6 - https://doi.org/10.1109/CTS.2010.5478458 N1 - 2010 International Symposium on Collaborative Technologies and Systems, 17-21 May 2010, Chicago, IL, USA SP - 611 EP - 616 PB - IEEE CY - Piscataway, NJ ER - TY - JOUR A1 - Ziemons, Karl A1 - Heinrichs, U. A1 - Streun, M. A1 - Pietrzyk, Uwe T1 - Validation of GEANT3 simulation studies with a dual-head PMT ClearPET™ prototype JF - 2003 IEEE Nuclear Science Symposium Conference Record, Vol. 5 N2 - The ClearPET™ project is proposed by working groups of the Crystal Clear Collaboration (CCC) to develop a 2nd generation high performance small animal positron emission tomograph (PET). High sensitivity and high spatial resolution is foreseen for the ClearPET™ camera by using a phoswich arrangement combining mixed lutetium yttrium aluminum perovskite (LuYAP:Ce) and lutetium oxyorthosilicate (LSO) scintillating crystals. Design optimizations for the first photomultiplier tube (PMT) based ClearPET camera are done with a Monte-Carlo simulation package implemented on GEANT3 (CERN, Geneva, Switzerland). A dual-head prototype has been built to test the frontend electronics and was used to validate the implementation of the GEANT3 simulation tool. Multiple simulations were performed following the experimental protocols to measure the intrinsic resolution and the sensitivity profile in axial and radial direction. Including a mean energy resolution of about 27.0% the simulated intrinsic resolution is about (1.41±0.11)mm compared to the measured of (1.48±0.06)mm. The simulated sensitivity profiles show a mean square deviation of 12.6% in axial direction and 3.6% in radial direction. Satisfactorily these results are representative for all designs and confirm the scanner geometry. Y1 - 2004 SN - 1082-3654 SP - 3053 EP - 3056 ER - TY - JOUR A1 - Khodaverdi, M. A1 - Chatziioannou, A. F. A1 - Weber, S. A1 - Ziemons, Karl A1 - Halling, H. A1 - Pietrzyk, Uwe T1 - Investigation of different MicroCT scanner configurations by GEANT4 simulations JF - IEEE Transactions on Nuclear Science N2 - This study has been performed to design the combination of the new ClearPET (ClearPET is a trademark of the Crystal Clear Collaboration), a small animal positron emission tomography (PET) system, with a micro-computed tomography (microCT) scanner. The properties of different microCT systems have been determined by simulations based on GEANT4. We will demonstrate the influence of the detector material and the X-ray spectrum on the obtained contrast. Four different detector materials (selenium, cadmium zinc telluride, cesium iodide and gadolinium oxysulfide) and two X-ray spectra (a molybdenum and a tungsten source) have been considered. The spectra have also been modified by aluminum filters of varying thickness. The contrast between different tissue types (water, air, brain, bone and fat) has been simulated by using a suitable phantom. The results indicate the possibility to improve the image contrast in microCT by an optimized combination of the X-ray source and detector material. Y1 - 2005 SN - 0018-9499 VL - 52 IS - 1 SP - 188 EP - 192 ER - TY - JOUR A1 - Ziemons, Karl A1 - Bruyndonckx, P. A1 - Perez, J. M. A1 - Pietrzyk, Uwe A1 - Rato, P. A1 - Tavernier, S. T1 - Beyond ClearPET: Next Aims JF - 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro Symposium Proceedings ISBI 2008 N2 - The CRYSTAL CLEAR collaboration, in short CCC, is a consortium of 12 academic institutions, mainly from Europe, joining efforts in the area of developing instrumentation for nuclear medicine and medical imaging. In the framework of the CCC a high performance small animal PET system, called ClearPET, was developed by using new technologies in electronics and crystals in a phoswich arrangement combining two types of lutetium- based scintillator materials: LSO:Ce and LuYAP:Ce. Our next aim will be the development of hybrid image systems. Hybrid MR-PET imaging has many unique advantages for brain research. This has sparked a new research line within CCC for the development of novel MR-PET compatible technologies. MRI is not as sensitive as PET but PET has poorer spatial resolution than MRI. Two major advantages of PET are sensitivity and its ability to acquire metabolic information. To assess these innovations, the development of a 9.4T hybrid animal MR-PET scanner is proposed based on an existing 9.4T MR scanner that will be adapted to enable simultaneous acquisition of MR and PET data using cutting- edge technology for both MR and PET. Y1 - 2008 SN - 978-1-4244-2003-2 SP - 1421 EP - 1424 ER - TY - JOUR A1 - Khodaverdi, M. A1 - Chaziioannou, A. F. A1 - Weber, S. A1 - Ziemons, Karl A1 - Halling, H. A1 - Pietrzyk, Uwe T1 - Investigation of different microCT scanner configurations by GEANT4 simulations JF - 2003 IEEE Nuclear Science Symposium Conference Record, Vol. 4 N2 - This study has been performed to design the combination of the new ClearPET TM (ClearPET is a trademark of the Crystal Clear Collaboration), a small animal Positron Emission Tomography (PET) system, with a microComputed Tomography (microCT) scanner. The properties of different microCT systems have been determined by simulations based on GEANT4. We demonstrate the influence of the detector material and the X-ray spectrum on the obtained contrast. Four different detector materials (selenium, cadmium zinc telluride, cesium iodide and gadolinium oxysulfide) and two X-ray spectra (a molybdenum and a tungsten source) have been considered. The spectra have also been modified by aluminum filters of varying thickness. The contrast between different tissue types (water, air, brain, bone and fat) has been simulated by using a suitable phantom. The results indicate the possibility to improve the image contrast in microCT by an optimized combination of the X-ray source and detector material. Y1 - 2004 SN - 1082-3654 SP - 2989 EP - 2993 ER - TY - JOUR A1 - Wagner, Torsten A1 - Werner, Frederik A1 - Miyamoto, Ko-ichiro A1 - Ackermann, Hans-Josef A1 - Yoshinobu, Tatsuo A1 - Schöning, Michael Josef T1 - FPGA-based LAPS device for the flexible design of sensing sites on functional interfaces JF - Physica Status Solidi (A) N2 - The development of new interfaces for (bio-)chemical sensors requires comprehensive analyses and testing. The light-addressable potentiometric sensor (LAPS) can be used as a platform to investigate the sensitivity of a newly developed interface towards (bio-)chemical agents. LAPS measurements are spatially resolved by utilisation of focused light beams to define individual measurement spots. In this work, a new digitally modulated LAPS set-up based on an FPGA design will be introduced to increase the number of measurement spots, to shorten the measurement time and to improve the measurement accuracy. Y1 - 2010 U6 - https://doi.org/10.1002/pssa.200983320 SN - 1862-6300 N1 - Special Issue: Engineering of Functional Interfaces EnFI 2009 VL - 207 IS - 4 SP - 844 EP - 849 PB - Wiley-VCH CY - Weinheim ER - TY - CHAP A1 - Streun, M. A1 - Al-Kaddoum, R. A1 - Parl, C. A1 - Pietrzyk, Uwe A1 - Ziemons, Karl A1 - Waasen, S. van T1 - Simulation studies of optical photons in monolithic block scintillators T2 - 2011 IEEE Nuclear Science Symposium Conference Record (NSS/MIC) N2 - The interest in PET detectors with monolithic block scintillators is growing. In order to obtain high spatial resolutions dedicated positioning algorithms are required. But even an ideal algorithm can only deliver information which is provided by the detector. In this simulation study we investigated the light distribution on one surface of cuboid LSO scintillators of different size. Scintillators with a large aspect ratio (small footprint and large height) showed significant position information only for a minimum interaction depth of the gamma particle. The results allow a quantitative estimate for a useful aspect ratio. Y1 - 2012 SN - 978-1-4673-0120-6 (electronic ISBN) SN - 978-1-4673-0118-3 (print ISBN) U6 - https://doi.org/10.1109/NSSMIC.2011.6154621 SP - 1380 EP - 1382 PB - IEEE CY - New York ER -