TY  - JOUR
A1  - Burkhardt, Klaus
A1  - Schwarz, Sonja
A1  - Pan, Chengrui
A1  - Stelter, Felix
A1  - Kotliar, Konstantin
A1  - Eynatten, Maxilian von
A1  - Sollinger, Daniel
A1  - Lanzl, Ines
A1  - Heemann, Uwe
A1  - Baumann, Marcus
T1  - Myeloid-related protein 8/14 complex describes microcirculatory alterations in patients with type 2 diabetes and nephropathy
JF  - Cardiovascular Diabetology
Y1  - 2009
SN  - 1475-2840
VL  - 8
IS  - 10
SP  - 1
EP  - 8
PB  - -
ER  - 
TY  - JOUR
A1  - Gutheil, Inge
A1  - Berg, Tommy
A1  - Grotendorst, Johannes
T1  - Performance Analysis of Parallel Eigensolvers of two Libraries on BlueGene/P
JF  - Journal of Mathematics and Systems Science
N2  - Many applications in computational science and engineering require the computation of eigenvalues and vectors of dense symmetric or Hermitian matrices. For example, in DFT (density functional theory) calculations on modern supercomputers 10% to 30% of the eigenvalues and eigenvectors of huge dense matrices have to be calculated. Therefore, performance and parallel scaling of the used eigensolvers is of upmost interest. In this article different routines of the linear algebra packages ScaLAPACK and Elemental for parallel solution of the symmetric eigenvalue problem are compared concerning their performance on the BlueGene/P supercomputer. Parameters for performance optimization are adjusted for the different data distribution methods used in the two libraries. It is found that for all test cases the new library Elemental which uses a two-dimensional element by element distribution of the matrices to the processors shows better performance than the old ScaLAPACK library which uses a block-cyclic distribution.
KW  - performance analysis
KW  - Elemental
KW  - ScaLAPACK
KW  - eigensolvers
KW  - Numerical linear algebra
Y1  - 2012
U6  - http://dx.doi.org/10.17265/2159-5291/2012.04.003
SN  - 2159-5291
VL  - 2
IS  - 4
SP  - 231
EP  - 236
PB  - David Publishing
CY  - Libertyville
ER  - 
TY  - JOUR
A1  - Grotendorst, Johannes
T1  - Supercomputer programmieren - ein besonderes Studienangebot in Jülich
JF  - Junge Wissenschaft. 27 (2012), H. 94
Y1  - 2012
SN  - 0179-8529
SP  - 12
EP  - 14
PB  - -
ER  - 
TY  - JOUR
A1  - Grotendorst, Johannes
T1  - IAS Winter School: Hierarchical Methods for Dynamics in Complex Molecular Systems
JF  - Innovatives Supercomputing in Deutschland : inSiDE. 10 (2012), H. 1
Y1  - 2012
SP  - 104
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Kozlova, Tatiana V.
A1  - Lanzl, Ines M.
T1  - Postoperative aqueous outflow in the human eye after glaucoma filtration surgery: biofluidmechanical considerations
JF  - Biomedizinische Technik = Biomedical Engineering
Y1  - 2009
SN  - 1862-278X
VL  - 54
IS  - 1
SP  - 14
EP  - 22
PB  - -
ER  - 
TY  - JOUR
A1  - Seidova, Seid-Fatima
A1  - Kotliar, Konstantin
A1  - Foerger, Frauke
A1  - Klopfer, Matthias
A1  - Lanzl, Ines
T1  - Functional retinal changes in Gaucher disease
JF  - Documenta Ophthalmologica
Y1  - 2009
SN  - 1573-2622
VL  - 118
IS  - 2
SP  - 151
EP  - 154
PB  - Springer
CY  - Berlin
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Lanzl, Ines M.
A1  - Maier, Mathias
A1  - Feucht, Nikolaus
T1  - Intraocular pressure effects of pegaptanib (macugen) injections in patients with and without glaucoma / Lanzl, Ines M. ; Maier, Mathias ; Feucht, Nikolaus ; Lohmann, Chris P. ; Kotliar, Konstantin E.
JF  - American Journal of Ophthalmology . 145 (2008), H. 1
Y1  - 2008
SN  - 1879-1891
SP  - 185
EP  - 185
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Vilser, Walthatd
A1  - Nagel, Edgar
A1  - Lanzl, Ines M.
T1  - Retinal vessel reaction in response to chromatic flickering light / Kotliar, Konstantin E. ; Vilser, Walthard ; Nagel, Edgar ; Lanzl, Ines M.
JF  - Graefe's Archive for Clinical and Experimental Ophthalmology. 242 (2004), H. 5
Y1  - 2004
SN  - 1435-702X
SP  - 377
EP  - 392
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Bauer, S. M.
A1  - Zamuraev, L. A.
T1  - Model of the transversely isotropic spherical layer for estimation of intraocular pressure changes after intravitreal injections / Bauer, S. M. ; Zamuraev, L. A. ; Kotliar, K. E.
JF  - Rossiiskii zhurnal biomekhaniki = Russian Journal of biomechanics. 10 (2006), H. 2
Y1  - 2006
SN  - 1812-5123
SP  - 41
EP  - 47
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Svetlova, O. V.
A1  - Zinoviewa, N. V.
A1  - Krylova, I. S.
T1  - Elaboration of the conception of the biomechanical model of the aqueous intraocular outflow / Svetlova, O. V. ; Zinoviewa, N. V. ; Krylova, I. S. ; Koshitz, I. N. ; Smolnikov, B. A. ; Fedorova, E. M. ; Kotliar, K. E.
JF  - Rossiiskii zhurnal biomekhaniki = Russian Journal of biomechanics. 5 (2001), H. 3
Y1  - 2001
SN  - 1812-5123
SP  - 23
EP  - 27
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Lanzl, Ines M.
A1  - Witta, Birka
A1  - Vilser, Walthard
T1  - Reaktion retinaler Gefäßdurchmesser auf 100 % O2-Atmung - funktionelle Messung mit dem Retinal Vessel Analyzer an 10 Probanden / Lanzl, Ines M. ; Witta, Birke ; Kotliar, Konstantin ; Vilser, Walthard
JF  - Klinische Monatsblätter für Augenheilkunde. 217 (2000), H. 4
Y1  - 2000
SN  - 1439-3999
N1  - = Retinal vessel reaction to 100 % O2 breathing - functional imaging by retinal vessel analyzer in 10 volunteers
SP  - 231
EP  - 235
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Koshitz, I. N.
A1  - Svetlova, O. V.
A1  - Zaseeva, M. V.
T1  - Physiological principles of hypotensive therapy of open-angle glaucoma during presbyopic period. Part I Initial theoretical presuppositions, hypotheses and facts / Koshitz, I. N. ; Svetlova, O. V. ; Zaseeva, M. V. ; Shuhaev, S. V. ; Makarov, F. N. ; Kotli
JF  - Glaukoma (2006)
Y1  - 2006
N1  - Original in Russisch
SP  - 35
EP  - 53
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Koshitz, I. N.
A1  - Svetlowa, O. V.
A1  - Zaseeva, M. V.
T1  - Physiological principles of hypotensive therapy of open-angle glaucoma during presbyopic period. Part II Promising algorithms of practical sparing applications / Koshitz, I. N. ; Svetlova, O. V. ; Zaseeva, M. V. ; Shuhaev, S. V. ; Makarov, F. N. ; Kotliar
JF  - Glaukoma (2006)
Y1  - 2006
N1  - Original in Russisch
SP  - 51
EP  - 70
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Vilser, W.
A1  - Schmidt-Trucksäss, A.
A1  - Halle, M.
A1  - Lanzl, I. M.
T1  - Zeitliche Schwingungen retinaler Gefäßdurchmesser bei Gesunden unterschiedlichen Alters : Kreuz- und Autokorrelation für dynamische Gefäßanalyse
JF  - Der Ophthalmologe
Y1  - 2009
SN  - 1433-0423
VL  - 106
IS  - 7
SP  - 609
EP  - 618
PB  - -
ER  - 
TY  - JOUR
A1  - Lanzl, Ines M.
A1  - Seidova, Seid-Fatima
A1  - Maier, Mathias
A1  - Schmidt-Trucksäss, Arno
A1  - Halle, Martin
A1  - Kotliar, Konstantin
T1  - Dynamic retinal vessel response to flicker in age-related macular degeneration patients before and after vascular endothelial growth factor inhibitor injection
JF  - Acta Ophthalmologica
Y1  - 2011
SN  - 1755-3768
VL  - 89
IS  - 5
SP  - 472
EP  - 479
PB  - Wiley
CY  - Weinheim
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Maier, Mathias
A1  - Bauer, Svetlana
A1  - Feucht, Nikolaus
A1  - Lohmann, Chris
A1  - Lanzl, Ines
T1  - Intravitreal injection of triamcinolone acetonide and intraocular pressure: author's reply
JF  - Acta Ophthalmologica
Y1  - 2008
SN  - 1755-3768
VL  - 86
IS  - 6
SP  - 692
EP  - 693
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Nagel, Edgar
A1  - Vilser, Walthard
A1  - Lanzl, Ines M.
T1  - Functional in vivo assessment of retinal artery microirregularities in glaucoma / Kotliar, Konstantin E. ; Nagel, Edgar ; Vilser, Walthard ; Lanzl, Ines M.
JF  - Acta Ophthalmologica. 86 (2008), H. 4
Y1  - 2008
SN  - 1755-3768
SP  - 424
EP  - 433
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Maier, Mathias
A1  - Bauer, Svetlana
A1  - Feucht, Nikolaus
T1  - Effect of intravitreal injections and volume changes on intraocular pressure: clinical results and biomechanical model / Kotliar, Konstantin ; Maier, Mathias ; Bauer, Svetlana ; Feucht, Nikolaus ; Lohmann, Chris ; Lanzl, Ines
JF  - Acta Ophthalmologica Scandinavica. 85 (2007), H. 7
Y1  - 2007
SN  - 1755-3768
SP  - 777
EP  - 781
PB  - -
ER  - 
TY  - JOUR
A1  - Nurispahic, A.
A1  - Kotliar, Konstantin
A1  - Lanzl, I.
T1  - Messung der Akkommodation mittels optischer Biometrie
JF  - Der Ophthalmologe
Y1  - 2008
SN  - 1433-0423
VL  - 105
IS  - 4
SP  - 369
EP  - 375
PB  - -
ER  - 
TY  - JOUR
A1  - Menzel, C.
A1  - Kotliar, Konstantin
A1  - Lanzl, I.
T1  - Retrospektive Untersuchung jahreszeitlich bedingter Einflussfaktoren auf den Augeninnendruck therapierter Glaukompatienten
JF  - Der Ophthalmologe
Y1  - 2009
SN  - 1433-0423
VL  - 106
IS  - 11
SP  - 1006
EP  - 1011
PB  - -
ER  - 
TY  - JOUR
A1  - Kotliar, Konstantin
A1  - Mogilevskiĭ, A. Ia.
A1  - Shilo, A. V.
A1  - Panchekha, A. P.
T1  - [Chaotic non-linear dynamics of alpha-band of the EEg and organization of the cortical activity of P300 wave] / Mogilevskiĭ, A. Ia. ; Kotliar, K. E. ; Shilo, A. V. ; Panchekha, A. P.
JF  - Zhurnal vyssheĭ nervnoĭ deiatelnosti imeni I P Pavlova. 58 (2008), H. 5
Y1  - 2008
SN  - 0044-4677
N1  - Original in Russisch ; English abstract
SP  - 562
EP  - 575
PB  - -
ER  - 
TY  - JOUR
A1  - Zerlin, Kay
A1  - Digel, Ilya
A1  - Stadler, Andreas M.
A1  - Büldt, Georg
A1  - Zaccai, Guiseppe
A1  - Artmann, Gerhard
T1  - Dynamics and interactions of hemoglobin in human red blood cells and concentrated hemoglobin solutions
JF  - Regenerative medicine. 2 (2007), H. 5
Y1  - 2007
SN  - 1746-0751
N1  - Proceedings of the 3rd World Congress on Regenerative Medicine. October 18-20, 2007. Leipzig, Germany
SP  - 573
EP  - 573
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Zerlin, Kay
A1  - Temiz Artmann, Aysegül
A1  - Engels, S.
T1  - Protein dynamics in thermosensation
JF  - Regenerative medicine. 2 (2007), H. 5
Y1  - 2007
SN  - 1746-0751
N1  - Proceedings of the 3rd World Congress on Regenerative Medicine. October 18-20, 2007. Leipzig, Germany
SP  - 533
EP  - 533
ER  - 
TY  - JOUR
A1  - Zerlin, Kay
A1  - Kasischke, Nicole
A1  - Digel, Ilya
A1  - Maggakis-Kelemen, Christina
A1  - Temiz Artmann, Aysegül
A1  - Porst, Dariusz
A1  - Kayser, Peter
A1  - Linder, Peter
A1  - Artmann, Gerhard
T1  - Structural transition temperature of hemoglobins correlates with species’ body temperature
JF  - European Biophysics Journal. 37 (2007), H. 1
Y1  - 2007
SN  - 1432-1017
SP  - 1
EP  - 10
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Kurulgan Demirci, Eylem
A1  - Linder, Peter
A1  - Kayser, Peter
T1  - Decrease in extracellular collagen crosslinking after NMR magnetic field application in skin fibroblasts
JF  - Medical and Biological Engineering and Computing. 45 (2007), H. 1
Y1  - 2007
SN  - 1741-0444
SP  - 91
EP  - 97
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Maggakis-Kelemen, Christina
A1  - Zerlin, Kay
A1  - Linder, Peter
T1  - Body temperature-related structural transitions of monotremal and human hemoglobin
JF  - Biophysical Journal. 91 (2006), H. 8
Y1  - 2006
SN  - 1542-0086
SP  - 3014
EP  - 3021
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Temiz Artmann, Aysegül
A1  - Nishikawa, K.
A1  - Cook, M.
T1  - Bactericidal effects of plasma-generated cluster ions
JF  - Medical and Biological Engineering and Computing. 43 (2005), H. 6
Y1  - 2005
SN  - 1741-0444
SP  - 800
EP  - 807
ER  - 
TY  - JOUR
A1  - Trzewik, Jürgen
A1  - Temiz Artmann, Aysegül
A1  - Linder, Peter
A1  - Demirci, T.
A1  - Digel, Ilya
A1  - Artmann, Gerhard
T1  - Evaluation of lateral mechanical tension in thin-film tissue constructs
JF  - Annals of Biomedical Engineering. 32 (2004), H. 9
Y1  - 2004
SN  - 1573-9686
SP  - 1243
EP  - 1251
ER  - 
TY  - JOUR
A1  - Bogoyavlenskiy, A. P.
A1  - Berezin, V. E.
A1  - Ogneva, A. V.
A1  - Tolmacheva, V. P.
A1  - Digel, Ilya
A1  - Khudyakova, S. S.
T1  - Immunostimulating activity of a saponin-containing extract of Saponaria officinalis
JF  - Voprosy virusologii
Y1  - 1999
SN  - 0507-4088
VL  - 44
IS  - 5
SP  - 229
EP  - 232
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Trzewik, Jürgen
A1  - Demirci, Taylan
A1  - Temiz Artmann, Aysegül
T1  - Response of fibroblasts to cyclic mechanical stress : a proteome approach / Digel, I. ; Trzewik, J. ; Demirci, T. ; Temiz Artmann, A. ; Artmann, G. M.
JF  - Biomedizinische Technik. 49 (2004), H. Erg.-Bd. 2
Y1  - 2004
SN  - 0932-4666
SP  - 1042
EP  - 1043
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Demirci, Taylan
A1  - Temiz Artmann, Aysegül
A1  - Nishikawa, K.
T1  - Free Radical Nature of the Bactericidal Effect of Plasma-Generated Cluster Ions (PCIs)
JF  - Biomedizinische Technik. 49 (2004), H. Erg.-Bd. 2
Y1  - 2004
SN  - 0932-4666
SP  - 982
EP  - 983
ER  - 
TY  - JOUR
A1  - Bohrn, Ulrich
A1  - Stütz, Evamaria
A1  - Fleischer, Maximilian
A1  - Schöning, Michael Josef
A1  - Wagner, Patrick
T1  - Using a cell-based gas biosensor for investigation of adverse effects of acetone vapors in vitro
JF  - Biosensors and Bioelectronics. 40 (2013), H. 1
Y1  - 2013
SN  - 0956-5663
SP  - 393
EP  - 400
PB  - Elsevier
CY  - Amsterdam
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Temiz Artmann, Aysegül
A1  - Nishikawa, K.
A1  - Artmann, Gerhard
T1  - Cluster air-ion effects on bacteria and moulds
JF  - Biomedizinische Technik. 49 (2004), H. Erg.-Bd. 2
Y1  - 2004
SN  - 0932-4666
SP  - 1040
EP  - 1041
ER  - 
TY  - JOUR
A1  - Maggakis-Kelemen, Christina
A1  - Digel, Ilya
A1  - Artmann, Gerhard
T1  - Polystyrene sulfonate/Polyallylamine hydrochloride microcapsules as potential artificial red blood cells - improvement of capsule flexibility
JF  - Biomedizinische Technik. 50 (2005), H. Erg.-Bd. 1
Y1  - 2005
SP  - 324
EP  - 326
ER  - 
TY  - JOUR
A1  - Stadler, Andreas M.
A1  - Zerlin, Kay
A1  - Digel, Ilya
A1  - Büldt, Georg
A1  - Zaccai, Guiseppe
A1  - Artmann, Gerhard
T1  - Dynamics and interactions of hemoglobin in red blood cells
JF  - Tissue Engineering Part A. 14 (2008), H. 5
Y1  - 2008
SN  - 1937-3341
N1  - TERMIS EU 2008 Porto Meeting June 22–26, 2008 Porto Congress Center–Alfândega Portugal
SP  - 724
EP  - 724
ER  - 
TY  - JOUR
A1  - Kurulgan Demirci, Eylem
A1  - Linder, Peter
A1  - Demirci, Taylan
A1  - Trzewik, Jürgen
A1  - Digel, Ilya
A1  - Artmann, Gerhard
A1  - Temiz Artmann, Aysegül
T1  - Contractile tension of endothelial cells: An LPS based in-vitro sepsis model
JF  - IUBMB Life. 61 (2009), H. 3
Y1  - 2009
SN  - 1521-6543
N1  - Abstracts: Turkish Society of Molecular Medicine, Third International Congress of Molecular Medicine, May 5-8, 2009, Istanbul, Turkey
SP  - 307
EP  - 308
PB  - Wiley
CY  - Weinheim
ER  - 
TY  - JOUR
A1  - Artmann, Gerhard
A1  - Digel, Ilya
A1  - Linder, Peter
A1  - Porst, Dariusz
T1  - Mechanism of haemoglobin sensing body temperature
JF  - Tissue Engineering Part A. 14 (2008), H. 5
Y1  - 2008
SN  - 1937-3341
N1  - TERMIS EU 2008 Porto Meeting June 22–26, 2008 Porto Congress Center–Alfândega Portugal
SP  - 754
EP  - 754
ER  - 
TY  - JOUR
A1  - Artmann, Gerhard
A1  - Zerlin, Kay
A1  - Digel, Ilya
A1  - Stadler, Andreas M.
T1  - Physical discontinuities at body temperature in human red blood cells / Artmann, GM ; Zerlin, K ; Digel, I ; Stadler, A ; Zaccai, G ; Temiz, AA
JF  - Tissue Engineering. 13 (2007), H. 7
Y1  - 2007
SN  - 1076-3279
N1  - TERMIS-EU Meeting Abstracts London, UK September 4–7, 2007
SP  - 1778
EP  - 1778
ER  - 
TY  - JOUR
A1  - Murib, Mohammed S.
A1  - Tran, Anh Quang
A1  - Ceuninck, Ward de
A1  - Schöning, Michael Josef
A1  - Nesladek, Milos
A1  - Serpengüzel, Ali
A1  - Wagner, Patrick
T1  - Analysis of an optical biosensor based on elastic light scattering from diamond-, glass-, and sapphire microspheres
JF  - Physica Status Solidi A
N2  - Deoxyribonucleic acid (DNA) and protein recognition are now standard tools in biology. In addition, the special optical properties of microsphere resonators expressed by the high quality factor (Q-factor) of whispering gallery modes (WGMs) or morphology dependent resonances (MDRs) have attracted the attention of the biophotonic community. Microsphere-based biosensors are considered as powerful candidates to achieve label-free recognition of single molecules due to the high sensitivity of their WGMs. When the microsphere surface is modified with biomolecules, the effective refractive index and the effective size of the microsphere change resulting in a resonant wavelength shift. The transverse electric (TE) and the transverse magnetic (TM) elastic light scattering intensity of electromagnetic waves at 600 and 1400 nm are numerically calculated for DNA and unspecific binding of proteins to the microsphere surface. The effect of changing the optical properties was studied for diamond (refractive index 2.34), glass (refractive index 1.50), and sapphire (refractive index 1.75) microspheres with a 50 µm radius. The mode spacing, the linewidth of WGMs, and the shift of resonant wavelength due to the change in radius and refractive index, were analyzed by numerical simulations. Preliminary results of unspecific binding of biomolecules are presented. The calculated shift in WGMs can be used for biomolecules detection.
Y1  - 2012
U6  - http://dx.doi.org/10.1002/pssa.201100795
SN  - 1862-6319
N1  - Special Issue: "Fundamentals and Applications of Diamond"
VL  - 209
IS  - 9
SP  - 1804
EP  - 1810
PB  - Wiley-VCH
CY  - Weinheim
ER  - 
TY  - JOUR
A1  - Digel, Ilya
A1  - Zhubanova, Azhar A.
A1  - Nojima, H.
A1  - Artmann, Gerhard
T1  - The use of bactericidal effects of cluster ions generated by plasma in medical biotechnology
JF  - Biotechnologija : teorija i praktika (2004)
Y1  - 2004
SN  - 1028-9399
SP  - 46
EP  - 52
ER  -